Tools for making TxDb objects from genomic annotations


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Documentation for package ‘txdbmaker’ version 1.0.1

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txdbmaker-package Tools for making TxDb objects from genomic annotations
browseUCSCtrack Make a TxDb object from annotations available at the UCSC Genome Browser
getChromInfoFromBiomart Make a TxDb object from annotations available on a BioMart database
makeFDbPackageFromUCSC Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeFeatureDbFromUCSC Making a FeatureDb object from annotations available at the UCSC Genome Browser
makePackageName Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeTxDb Making a TxDb object from user supplied annotations
makeTxDbFromBiomart Make a TxDb object from annotations available on a BioMart database
makeTxDbFromEnsembl Make a TxDb object from an Ensembl database
makeTxDbFromGFF Make a TxDb object from annotations available as a GFF3 or GTF file
makeTxDbFromGRanges Make a TxDb object from a GRanges object
makeTxDbFromUCSC Make a TxDb object from annotations available at the UCSC Genome Browser
makeTxDbPackage Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeTxDbPackageFromBiomart Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
makeTxDbPackageFromUCSC Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
supportedMiRBaseBuildValues Making a TxDb package from annotations available at the UCSC Genome Browser, biomaRt or from another source.
supportedUCSCFeatureDbTables Making a FeatureDb object from annotations available at the UCSC Genome Browser
supportedUCSCFeatureDbTracks Making a FeatureDb object from annotations available at the UCSC Genome Browser
supportedUCSCtables Make a TxDb object from annotations available at the UCSC Genome Browser
txdbmaker Tools for making TxDb objects from genomic annotations
UCSCFeatureDbTableSchema Making a FeatureDb object from annotations available at the UCSC Genome Browser